高级检索
当前位置: 首页 > 详情页

Whole-transcriptome sequencing with ceRNA regulation network construction and verification in glioblastoma

| 导出 |

文献详情

资源类型:
WOS体系:
Pubmed体系:

收录情况: ◇ SCIE ◇ 预警期刊

机构: [1]Nanchang Med Coll, Jiangxi Prov Peoples Hosp, Affiliated Hosp 1, Dept Neurosurg, Nanchang 330000, Jiangxi, Peoples R China [2]Hebei Univ,Affiliated Hosp,Dept Neurosurg,Baoding 071000,Hebei,Peoples R China [3]Hebei Univ, Sch Clin Med, Dept Surg, Baoding 071000, Hebei, Peoples R China [4]Capital Med Univ, Sch Publ Hlth, Dept Toxicol & Sanit Chem, Beijing 100069, Peoples R China [5]Taizhou Univ, Sch Med, Dept Nursing, Jiaojiang 318000, Zhejiang, Peoples R China [6]Nanchang Univ, Affiliated Hosp 2, Dept Pharm, Nanchang 330000, Jiangxi, Peoples R China [7]Shaoxing Peoples Hosp, Dept Plast Surg, Shaoxing 312000, Zhejiang, Peoples R China [8]Jiangxi Univ Chinese Med, Adv Res Inst, Dept Zool, Nanchang 330000, Jiangxi, Peoples R China [9]Zhejiang Prov Peoples Hosp, Hangzhou Med Coll, Canc Ctr, Dept Neurosurg, Hangzhou 310000, Zhejiang, Peoples R China
出处:
ISSN:

关键词: Glioblastoma whole-transcriptome sequencing ceRNA network hub genes hsa-miR-296-5p hsa-miR-874-5p

摘要:
Objectives: To explore the key genes involved in the occurrence and development of glioblastoma (GBM) by analyzing whole-transcriptome sequencing and biologic data from GBM and normal cerebral cortex tissues and to search for important noncoding RNA (ncRNA) molecular markers based on the competitive endogenous RNA (ceRNA) network. Methods: Ten GBM and normal cerebral cortex tissues were collected for full transcriptome sequencing, screened for differentially expressed (DE) mRNAs, miRNAs, lncRNAs, and circRNAs, and subjected to bioinformatic analysis. We constructed a Protein-Protein Interaction (PPI) network and a circRNA/lncRNA-miRNA-mRNA regulatory network and identified them using reverse transcription-quantitative polymerase chain reaction (RT-qPCR). Finally, The Cancer Genome Atlas (TCGA) and Chinese Glioma Genome Atlas (CGGA) databases were used to validate and conduct a survival analysis of the target genes. Results: A total of 5341 DEmRNAs, 259 DEmiRNAs, 3122 DElncRNAs, and 2135 DEcircRNAs were identified. Enrichment analysis showed that target genes regulated by DEmiRNA, DElncRNA, and DEcircRNA were closely related to chemical synaptic transmission and ion transmembrane transport. A PPI network analysis screened 10 hub genes that directly participate in tumor cell mitosis regulation. In addition, the ceRNA composite network showed that hsa-miR-296-5p and hsa-miR-874-5p were the central nodes of the network, and the reliability of relevant key molecules was successfully verified through RT-qPCR identification and the TCGA database. The CGGA database survival analysis produced 8 DEmRNAs closely related to GBM patient survival prognosis. Conclusions: This study revealed the important regulatory functions and molecular mechanisms of ncRNA molecules and identified hsa-miR-296-5p and hsa-miR-874-5p as key molecules in the ceRNA network. They may play an important role in GBM pathogenesis, treatment, and prognosis.

基金:
语种:
被引次数:
WOS:
PubmedID:
中科院(CAS)分区:
出版当年[2025]版:
大类 | 4 区 医学
小类 | 4 区 医学:研究与实验 4 区 肿瘤学
最新[2025]版:
大类 | 4 区 医学
小类 | 4 区 医学:研究与实验 4 区 肿瘤学
JCR分区:
出版当年[2023]版:
Q3 MEDICINE, RESEARCH & EXPERIMENTAL Q4 ONCOLOGY
最新[2023]版:
Q3 MEDICINE, RESEARCH & EXPERIMENTAL Q4 ONCOLOGY

影响因子: 最新[2023版] 最新五年平均 出版当年[2023版] 出版当年五年平均 出版前一年[2022版]

第一作者:
第一作者机构: [1]Nanchang Med Coll, Jiangxi Prov Peoples Hosp, Affiliated Hosp 1, Dept Neurosurg, Nanchang 330000, Jiangxi, Peoples R China [2]Hebei Univ,Affiliated Hosp,Dept Neurosurg,Baoding 071000,Hebei,Peoples R China [3]Hebei Univ, Sch Clin Med, Dept Surg, Baoding 071000, Hebei, Peoples R China
共同第一作者:
通讯作者:
通讯机构: [3]Hebei Univ, Sch Clin Med, Dept Surg, Baoding 071000, Hebei, Peoples R China [4]Capital Med Univ, Sch Publ Hlth, Dept Toxicol & Sanit Chem, Beijing 100069, Peoples R China
推荐引用方式(GB/T 7714):
APA:
MLA:

资源点击量:15101 今日访问量:4 总访问量:964 更新日期:2025-05-01 建议使用谷歌、火狐浏览器 常见问题

版权所有©2020 河北大学附属医院 技术支持:重庆聚合科技有限公司 地址:保定市莲池区裕华东路212号