Objectives: To explore the key genes involved in the occurrence and development of glioblastoma (GBM) by analyzing whole-transcriptome sequencing and biologic data from GBM and normal cerebral cortex tissues and to search for important noncoding RNA (ncRNA) molecular markers based on the competitive endogenous RNA (ceRNA) network. Methods: Ten GBM and normal cerebral cortex tissues were collected for full transcriptome sequencing, screened for differentially expressed (DE) mRNAs, miRNAs, lncRNAs, and circRNAs, and subjected to bioinformatic analysis. We constructed a Protein-Protein Interaction (PPI) network and a circRNA/lncRNA-miRNA-mRNA regulatory network and identified them using reverse transcription-quantitative polymerase chain reaction (RT-qPCR). Finally, The Cancer Genome Atlas (TCGA) and Chinese Glioma Genome Atlas (CGGA) databases were used to validate and conduct a survival analysis of the target genes. Results: A total of 5341 DEmRNAs, 259 DEmiRNAs, 3122 DElncRNAs, and 2135 DEcircRNAs were identified. Enrichment analysis showed that target genes regulated by DEmiRNA, DElncRNA, and DEcircRNA were closely related to chemical synaptic transmission and ion transmembrane transport. A PPI network analysis screened 10 hub genes that directly participate in tumor cell mitosis regulation. In addition, the ceRNA composite network showed that hsa-miR-296-5p and hsa-miR-874-5p were the central nodes of the network, and the reliability of relevant key molecules was successfully verified through RT-qPCR identification and the TCGA database. The CGGA database survival analysis produced 8 DEmRNAs closely related to GBM patient survival prognosis. Conclusions: This study revealed the important regulatory functions and molecular mechanisms of ncRNA molecules and identified hsa-miR-296-5p and hsa-miR-874-5p as key molecules in the ceRNA network. They may play an important role in GBM pathogenesis, treatment, and prognosis.
基金:
National Natural Science Foundation of China [81930091, 8177-3462, 81973077, 21805197]; Post-Graduate's Innovation Fund Project of Hebei Province [CXZZBS2022015]; Government-funded Clinical Medicine Outstanding Talent Training Project [360017]; Medical Science Foundation of Hebei University [2020A11]; Foundation Project of Affiliated Hospital of Hebei University [2019Z003]; Seed Foundation of Zhejiang Provincial People's Hospital [ZRY2022J003]
第一作者机构:[1]Nanchang Med Coll, Jiangxi Prov Peoples Hosp, Affiliated Hosp 1, Dept Neurosurg, Nanchang 330000, Jiangxi, Peoples R China[2]Hebei Univ,Affiliated Hosp,Dept Neurosurg,Baoding 071000,Hebei,Peoples R China[3]Hebei Univ, Sch Clin Med, Dept Surg, Baoding 071000, Hebei, Peoples R China
共同第一作者:
通讯作者:
通讯机构:[3]Hebei Univ, Sch Clin Med, Dept Surg, Baoding 071000, Hebei, Peoples R China[4]Capital Med Univ, Sch Publ Hlth, Dept Toxicol & Sanit Chem, Beijing 100069, Peoples R China
推荐引用方式(GB/T 7714):
Zeng Zhao-Mu,Chen Yue-Yue,Wen Xi-Chao,et al.Whole-transcriptome sequencing with ceRNA regulation network construction and verification in glioblastoma[J].AMERICAN JOURNAL OF TRANSLATIONAL RESEARCH.2023,15(6):4291-+.
APA:
Zeng, Zhao-Mu,Chen, Yue-Yue,Wen, Xi-Chao,Geng, Xiu-Chao,Zhu, Yi -Xi...&Zheng, Ke-Bin.(2023).Whole-transcriptome sequencing with ceRNA regulation network construction and verification in glioblastoma.AMERICAN JOURNAL OF TRANSLATIONAL RESEARCH,15,(6)
MLA:
Zeng, Zhao-Mu,et al."Whole-transcriptome sequencing with ceRNA regulation network construction and verification in glioblastoma".AMERICAN JOURNAL OF TRANSLATIONAL RESEARCH 15..6(2023):4291-+