BackgroundThis study aimed to observe the potential impact of known cuproptosis-related genes (CRGs) on triple negative breast cancer (TNBC) development, as well as their associated molecular mechanisms, immune infiltration mechanisms and potential therapeutic agents.ResultsBased on the Cox Proportional Hazard Model, 11 CRGs may be especially important in TNBC development and progression (considered as the Key-TNBC-CRGs). The expression of several Key-TNBC-CRGs (e.g., ATP7A, PIK3CA, LIAS, and LIPT) are associated with common mutations. The SCNA variation of 11 Key-TNBC-CRGs are related to differences immune infiltration profiles. In particular, depletion of ATP7A, ATP7B, CLS, LIAS, and SCL31A1 and while high amplification of NLRP3 and LIPT2 are correlated with decreased immune infiltration. In our Cox proportional hazards regression model, there is a significant difference in the overall survival between high-risk and low-risk groups. The HR in the high-risk group is 3.891 versus the low-risk group. And this model has a satisfactory performance in Prediction of 5-15-year survival, in particular in the 10-year survival (AUC = 0.836). Finally, we discovered some potential drugs for TNBC treatment based on the strategy of targeting 11 Key-TNBC-CRGs, such as Dasatinib combined with ABT-737, Erastin or Methotrexate, and Docetaxel/Ispinesib combination.ConclusionIn conclusion, CRGs may play important roles in TNBC development, and they can impact tumor immune microenvironment and patient survival. The Key-TNBC-CRGs interact mutually and can be influenced by common BC-related mutations. Additionally, we established a 11-gene risk model with a robust performance in prediction of 5-15-year survival. As well, some new drugs are proposed potentially effective in TNBC based on the CRG strategy.
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外文
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中科院(CAS)分区:
出版当年[2025]版:
大类|4 区生物学
小类|3 区生物工程与应用微生物4 区生化研究方法4 区数学与计算生物学
最新[2025]版:
大类|4 区生物学
小类|3 区生物工程与应用微生物4 区生化研究方法4 区数学与计算生物学
JCR分区:
出版当年[2023]版:
Q1MATHEMATICAL & COMPUTATIONAL BIOLOGYQ2BIOCHEMICAL RESEARCH METHODSQ2BIOTECHNOLOGY & APPLIED MICROBIOLOGY
最新[2023]版:
Q1MATHEMATICAL & COMPUTATIONAL BIOLOGYQ2BIOCHEMICAL RESEARCH METHODSQ2BIOTECHNOLOGY & APPLIED MICROBIOLOGY
第一作者机构:[1]Hebei Univ, Affiliated Hosp, Color Ultrasound Room, Baoding, Hebei, Peoples R China
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推荐引用方式(GB/T 7714):
Shi Bingye,Zhang Wei,Wang Tao,et al.The therapeutic and prognostic role of cuproptosis-related genes in triple negative breast cancer[J].BMC BIOINFORMATICS.2023,24(1):doi:10.1186/s12859-023-05348-3.
APA:
Shi, Bingye,Zhang, Wei,Wang, Tao&Cui, Zhenyu.(2023).The therapeutic and prognostic role of cuproptosis-related genes in triple negative breast cancer.BMC BIOINFORMATICS,24,(1)
MLA:
Shi, Bingye,et al."The therapeutic and prognostic role of cuproptosis-related genes in triple negative breast cancer".BMC BIOINFORMATICS 24..1(2023)