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Screening and functional prediction of differentially expressed circular RNAs in human glioma of different grades

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收录情况: ◇ SCIE ◇ 预警期刊

机构: [1]Hebei Univ Chinese Med, Fac Integrated Tradit Chinese & Western Med, Shijiazhuang 050091, Hebei, Peoples R China [2]Hebei Univ Chinese Med, Hebei Key Lab Chinese Med Res Cardiocerebrovasc D, Shijiazhuang 050091, Hebei, Peoples R China [3]Hebei Univ, Sch Clin Med, Baoding 071000, Peoples R China [4]Hebei Univ,Dept Neurosurg,Affiliated Hosp,Baoding 071000,Peoples R China [5]Hebei Univ Chinese Med, Fac Acupuncture Moxibust & Tuina, Shijiazhuang 050200, Hebei, Peoples R China [6]Hebei Med Univ, Dept Neurosurg, Second Hosp, Shijiazhuang 050000, Hebei, Peoples R China [7]Cangzhou Cent Hosp, Dept Gen Surg, Endoscope Room, Cangzhou 061001, Peoples R China [8]Hebei Univ,Dept Breast Surg,Affiliated Hosp,Baoding 071000,Peoples R China [9]Hebei Med Univ, Dept Biochem & Mol Biol, Key Lab Med Biotechnol Hebei Prov, Shijiazhuang 050017, Hebei, Peoples R China
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关键词: circRNA glioma RNA sequencing functional prediction

摘要:
Circular RNAs (circRNAs) have a critical regulatory function in human glioma. However, novel circRNAs related to different pathological grades of glioma and their crucial potential function are worth screening and prediction. CircRNA expression profiling was performed for 6 paired high- and low-grade glioma tissues and 5 adjacent normal brain tissues through next-generation sequencing. Quantitative real-time PCR (qRT-PCR) was conducted to validate circRNA expression. Bioinformatics analysis was performed, and circRNA-miRNA-mRNA networks were constructed. The expression and survival data of miRNAs and target genes were examined by GEPIA, Chinese Glioma Genome Atlas (CGGA), ONCOMINE, and cBioPortal databases. The RNA binding proteins (RBPs), open reading frames (ORFs) and N-6-methyladenosine (m(6)A) modifications of the identified circRNAs were also predicted. Through multilevel research screening, 4 circRNAs (hsa_circ_0000915, hsa_circ_0127664, hsa_circ_0008362, and hsa_circ_0001467) were associated with glioma of different pathological grades and could be preferred candidates for subsequent functional analysis. Therefore, circRNAs are associated with the different pathological grades of glioma and reveal their potential critical regulatory function. CircRNAs might provide vital molecular biomarkers and potential therapeutic targets for glioma.

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出版当年[2022]版:
大类 | 2 区 医学
小类 | 3 区 老年医学 3 区 细胞生物学
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出版当年[2021]版:
Q2 CELL BIOLOGY Q2 GERIATRICS & GERONTOLOGY
最新[2023]版:
Q2 CELL BIOLOGY Q2 GERIATRICS & GERONTOLOGY

影响因子: 最新[2023版] 最新五年平均 出版当年[2021版] 出版当年五年平均 出版前一年[2020版] 出版后一年[2022版]

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第一作者机构: [1]Hebei Univ Chinese Med, Fac Integrated Tradit Chinese & Western Med, Shijiazhuang 050091, Hebei, Peoples R China [2]Hebei Univ Chinese Med, Hebei Key Lab Chinese Med Res Cardiocerebrovasc D, Shijiazhuang 050091, Hebei, Peoples R China
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通讯机构: [1]Hebei Univ Chinese Med, Fac Integrated Tradit Chinese & Western Med, Shijiazhuang 050091, Hebei, Peoples R China [2]Hebei Univ Chinese Med, Hebei Key Lab Chinese Med Res Cardiocerebrovasc D, Shijiazhuang 050091, Hebei, Peoples R China [3]Hebei Univ, Sch Clin Med, Baoding 071000, Peoples R China
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